Jesper Ferkinghoff-Borg: search on Z-Library

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1

Kinetic Model for Signal Binding to the Quorum Sensing Regulator LasR

Claussen, Anetta, Jakobsen, Tim, Bjarnsholt, Thomas, Givskov, Michael, Welch, Martin, Ferkinghoff-Borg, Jesper, Sams, Thomas

Journal:

International Journal of Molecular Sciences

Year:

2013

Language:

english

File:

PDF, 442 KB

english, 2013

2

Quorum Sensing Regulation in Aeromonas hydrophila

Christian Garde, Thomas Bjarnsholt, Michael Givskov, Tim Holm Jakobsen, Morten Hentzer, Anetta Claussen, Kim Sneppen, Jesper Ferkinghoff-Borg, Thomas Sams

Journal:

Journal of Molecular Biology

Year:

2010

Language:

english

File:

PDF, 964 KB

english, 2010

3

Robust Estimation of Diffusion-Optimized Ensembles for Enhanced Sampling

Tian, Pengfei, Jónsson, Sigurdur Æ., Ferkinghoff-Borg, Jesper, Krivov, Sergei V., Lindorff-Larsen, Kresten, Irbäck, Anders, Boomsma, Wouter

Journal:

Journal of Chemical Theory and Computation

Year:

2014

Language:

english

File:

PDF, 1.25 MB

english, 2014

4

An Efficient Null Model for Conformational Fluctuations in Proteins

Tim Harder, Mikael Borg, Sandro Bottaro, Wouter Boomsma, Simon Olsson, Jesper Ferkinghoff-Borg, Thomas Hamelryck

Journal:

Year:

2012

Language:

english

File:

PDF, 1.01 MB

english, 2012

5

Competition between Diffusion and Fragmentation: An Important Evolutionary Process of Nature

Ferkinghoff-Borg, Jesper, Jensen, Mogens H., Mathiesen, Joachim, Olesen, Poul, Sneppen, Kim

Journal:

Physical Review Letters

Year:

2003

Language:

english

File:

PDF, 101 KB

english, 2003

6

Computational redesign of thioredoxin is hypersensitive towards minor conformational changes in the backbone template

Johansson, Kristoffer E., Johansen, Nicolai Tidemand, Christensen, Signe, Horowitz, Scott, Bardwell, James C.A., Olsen, Johan G., Willemoës, Martin, Lindorff-Larsen, Kresten, Ferkinghoff-Borg, Jesper,

Journal:

Journal of Molecular Biology

Year:

2016

Language:

english

File:

PDF, 2.09 MB

english, 2016

7

Robust Estimation of Diffusion-Optimized Ensembles for Enhanced Sampling

Tian, Pengfei, Jónsson, Sigurður, Ferkinghoff-Borg, Jesper, Krivov, Sergei, Lindorff-Larsen, Kresten, Boomsma, Wouter

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 78 KB

english, 2014

8

Genome-Wide Prediction of SH2 Domain Targets Using Structural Information and the FoldX Algorithm

Sánchez, Ignacio E., Beltrao, Pedro, Stricher, Francois, Schymkowitz, Joost, Ferkinghoff-Borg, Jesper, Rousseau, Frederic, Serrano, Luis, Rost, Burkhard

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 424 KB

english, 2008

9

Stop-and-go kinetics in amyloid fibrillation

Ferkinghoff-Borg, Jesper, Fonslet, Jesper, Andersen, Christian Beyschau, Krishna, Sandeep, Pigolotti, Simone, Yagi, Hisashi, Goto, Yuji, Otzen, Daniel, Jensen, Mogens H.

Journal:

Physical Review E

Year:

2010

Language:

english

File:

PDF, 612 KB

english, 2010

10

Neural mechanism of activity spread in the cat motor cortex and its relation to the intrinsic connectivity

Charles Capaday, Carl van Vreeswijk, Christian Ethier, Jesper Ferkinghoff-Borg, Doug Weber

Journal:

The Journal of Physiology

Year:

2011

Language:

english

File:

PDF, 577 KB

english, 2011

11

Calculation of accurate small angle X-ray scattering curves from coarse-grained protein models

Kasper Stovgaard, Christian Andreetta, Jesper Ferkinghoff-Borg, Thomas Hamelryck

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 1.29 MB

english, 2010

12

Experimental Parameterization of an Energy Function for the Simulation of Unfolded Proteins

Norgaard, Anders B., Ferkinghoff-Borg, Jesper, Lindorff-Larsen, Kresten

Journal:

Biophysical Journal

Year:

2008

Language:

english

File:

PDF, 336 KB

english, 2008

13

Stop-and-go kinetics in amyloid fibrillation

Ferkinghoff-Borg, Jesper, Fonslet, Jesper, Andersen, Christian, Krishna, Sandeep, Pigolotti, Simone, Yagi, Hisashi, Goto, Yuji, Otzen, Daniel Erik, Jensen, Mogens

Journal:

Nature Precedings

Year:

2010

Language:

english

File:

PDF, 182 KB

english, 2010

14

Compact phases of polymers with hydrogen bonding

Trovato, Antonio, Ferkinghoff-Borg, Jesper, Jensen, Mogens H.

Journal:

Physical Review E

Year:

2003

Language:

english

File:

PDF, 696 KB

english, 2003

15

Recognizing and Defining True Ras Binding Domains II: In Silico Prediction Based on Homology Modelling and Energy Calculations

Christina Kiel, Sabine Wohlgemuth, Frederic Rousseau, Joost Schymkowitz, Jesper Ferkinghoff-Borg, Fred Wittinghofer, Luis Serrano

Journal:

Journal of Molecular Biology

Year:

2005

Language:

english

File:

PDF, 778 KB

english, 2005

16

Dynamic Rearrangement of Cell States Detected by Systematic Screening of Sequential Anticancer Treatments

Koplev, Simon, Longden, James, Ferkinghoff-Borg, Jesper, Blicher Bjerregård, Mathias, Cox, Thomas R., Erler, Janine T., Pedersen, Jesper T., Voellmy, Franziska, Sommer, Morten O.A., Linding, Rune

Journal:

Year:

2017

Language:

english

File:

PDF, 4.25 MB

english, 2017

17

Dynamics of crystal formation in the Greenland NorthGRIP ice core

Mathiesen, Joachim, Ferkinghoff-Borg, Jesper, Jensen, Mogens H., Levinsen, Mogens, Olesen, Poul, Dahl-Jensen, Dorthe, Svensson, Anders

Journal:

Journal of Glaciology

Year:

2004

Language:

english

File:

PDF, 213 KB

english, 2004

18

Generative probabilistic models extend the scope of inferential structure determination

Simon Olsson, Wouter Boomsma, Jes Frellsen, Sandro Bottaro, Tim Harder, Jesper Ferkinghoff-Borg, Thomas Hamelryck

Journal:

Journal of Magnetic Resonance

Year:

2011

Language:

english

File:

PDF, 718 KB

english, 2011

19

Microbial Biofilm as a Smart Material

Garde, Christian, Welch, Martin, Ferkinghoff-Borg, Jesper, Sams, Thomas

Journal:

Year:

2015

Language:

english

File:

PDF, 417 KB

english, 2015

20

Quantifying information transfer by protein domains: Analysis of the Fyn SH2 domain structure

Tom Lenaerts, Jesper Ferkinghoff-Borg, Francois Stricher, Luis Serrano, Joost WH Schymkowitz, Frederic Rousseau

Journal:

BMC Structural Biology

Year:

2008

Language:

english

File:

PDF, 2.54 MB

english, 2008

21

Subtle Monte Carlo Updates in Dense Molecular Systems

Bottaro, Sandro, Boomsma, Wouter, E. Johansson, Kristoffer, Andreetta, Christian, Hamelryck, Thomas, Ferkinghoff-Borg, Jesper

Journal:

Journal of Chemical Theory and Computation

Year:

2012

Language:

english

File:

PDF, 3.61 MB

english, 2012

22

Stop-and-go kinetics in amyloid fibrillation

Ferkinghoff-Borg, Jesper, Fonslet, Jesper, Andersen, Christian, Krishna, Sandeep, Pigolotti, Simone, Yagi, Hisashi, Goto, Yuji, Otzen, Daniel Erik, Jensen, Mogens

Journal:

Nature Precedings

Year:

2010

File:

PDF, 182 KB

2010

23

Formulation of probabilistic models of protein structure in atomic detail using the reference ratio method

Valentin, Jan B., Andreetta, Christian, Boomsma, Wouter, Bottaro, Sandro, Ferkinghoff-Borg, Jesper, Frellsen, Jes, Mardia, Kanti V., Tian, Pengfei, Hamelryck, Thomas

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2014

Language:

english

File:

PDF, 3.02 MB

english, 2014

24

Combining Experiments and Simulations Using the Maximum Entropy Principle

Boomsma, Wouter, Ferkinghoff-Borg, Jesper, Lindorff-Larsen, Kresten, Levitt, Michael

Journal:

PLoS Computational Biology

Year:

2014

Language:

english

File:

PDF, 1.40 MB

english, 2014

25

A Probabilistic Model of RNA Conformational Space

Frellsen, Jes, Moltke, Ida, Thiim, Martin, Mardia, Kanti V., Ferkinghoff-Borg, Jesper, Hamelryck, Thomas, Gardner, Paul

Journal:

PLoS Computational Biology

Year:

2009

Language:

english

File:

PDF, 738 KB

english, 2009

26

[Statistics for Biology and Health] Bayesian Methods in Structural Bioinformatics ||

Hamelryck, Thomas, Mardia, Kanti, Ferkinghoff-Borg, Jesper

Year:

2012

Language:

english

File:

PDF, 7.04 MB

english, 2012

27

Diffusion, fragmentation, and coagulation processes: Analytical and numerical results

Olesen, Poul, Ferkinghoff-Borg, Jesper, Jensen, Mogens H., Mathiesen, Joachim

Journal:

Physical Review E

Year:

2005

Language:

english

File:

PDF, 210 KB

english, 2005

28

Novel optical and statistical methods reveal colloid–wall interactions inconsistent with DLVO and Lifshitz theories

Poul Martin Hansen, Jakob Kisbye Dreyer, Jesper Ferkinghoff-Borg, Lene Oddershede

Journal:

Journal of Colloid and Interface Science

Year:

2005

Language:

english

File:

PDF, 275 KB

english, 2005

29

Probabilistic Determination of Native State Ensembles of Proteins

Olsson, Simon, Vögeli, Beat Rolf, Cavalli, Andrea, Boomsma, Wouter, Ferkinghoff-Borg, Jesper, Lindorff-Larsen, Kresten, Hamelryck, Thomas

Journal:

Journal of Chemical Theory and Computation

Year:

2014

Language:

english

File:

PDF, 2.23 MB

english, 2014

30

Diffusion, fragmentation and merging: Rate equations, distributions and critical points

Jesper Ferkinghoff-Borg, Mogens H. Jensen, Joachim Mathiesen, Poul Olesen

Journal:

Physica D: Nonlinear Phenomena

Year:

2006

Language:

english

File:

PDF, 546 KB

english, 2006

31

Information theoretical quantification of cooperativity in signalling complexes

Tom Lenaerts, Jesper Ferkinghoff-Borg, Joost Schymkowitz, Frederic Rousseau

Journal:

BMC Systems Biology

Year:

2009

Language:

english

File:

PDF, 3.62 MB

english, 2009

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